PmiRKB- plant micrRNA knowledge base | Tool name | PmiRKB- plant micrRNA knowledge base |
|---|
| URL | http://bis.zju.edu.cn/pmirkb/ |
|---|
| Important features | Bioinformatic resource on plant microRNA that can be accessed under four broad domains: SNP module, Pri-miR module, MiR-Tar module, and Self-reg module. |
|---|
| Citations | Meng Y, Gou L, Chen D, Mao C, Jin Y, Wu P, Chen M. PmiRKB: a plant microRNA
knowledge base. Nucleic Acids Res. 2011 Jan;39(Database issue):D181-7. Epub 2010
Aug 18. PubMed PMID: 20719744; PubMed Central PMCID: PMC3013752.
|
|---|
| Year of publication | 2011 |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | |
|---|
| Function | 1.1 FIND microRNA: precursor, FIND microRNA: mature form, FUNCTIONAL ANALYSIS: regulation/ expression, SPECIES: plant, http://bis.zju.edu.cn/pmirkb/, Bioinformatic resource on plant microRNA that can be accessed under four broad domains: SNP module- Pri-miR module- MiR-Tar module- and Self-reg module. , Meng Y- Gou L- Chen D- Mao C- Jin Y- Wu P- Chen M. PmiRKB: a plant microRNA
knowledge base. Nucleic Acids Res. 2011 Jan;39(Database issue):D181-7. Epub 2010
Aug 18. PubMed PMID: 20719744; PubMed Central PMCID: PMC3013752.
, 2011, 100, Online, I. SPECIES SUPPORTED INCLUDE: Arabidopsis thaliana- Oryza sativa. II. QUERY OR INPUT DATA: 1. Search by microRNA- precursor microRNA by selecting from the given list 2. Detect SNPs 3. Identify transcription start sites . 4. Query PARE data derived from degradomes. . III. OUTPUT DATA: depending on the type of analysis chosen the output displays details on related microRNAs- precursor microRNAs- SNPs- transcription start sites- target sites- miRNA-target pair validation etc. |
|---|
| Category | |
|---|
| |
